System BER in the repair of oxidative damage in plants

Sylwia Włodarczyk

s.wlodarczyk@ihar.edu.pl
Instytut Hodowli i Aklimatyzacji Roślin – Państwowy Instytut Badawczy w Radzikowie (Poland)
https://orcid.org/0000-0002-9987-4976

Abstract

Plants have developed a number of mechanisms that are responsible for repairing the oxidative damage caused by reactive oxygen species. The base excision repair system is the main repair system for removing such changes. Herein, 8-oxoguanine DNA glycosylase and formamidopyrimidine DNA glycosylase are the two enzymes of importance for removing 8-oxoG. Researchers have confirmed that FPG and OGG1 levels increase during seed imbibition. Indeed, many researchers note the relationship between the accumulation of oxidative changes in the cell and the activity of OGG1 and FPG and the aging of seeds. This short review aims at presenting the published data on the operation of the base excision repair system in the process of repairing oxidative damage affecting seed aging.


Keywords:

BER system, seed aging, ROS, oxidative damage, FPG, OGG1

Brooks, S. C., Adhikary, S., Rubinson, E. H., Eichman, B. F., (2013). Recent advances in the structural mechanisms of DNA glycosylases. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1834, 247–271. https://doi.org/10.1016/j.bbapap.2012.10.005
Google Scholar

Cabral Medeiros, N. M., Córdoba-Cañero, D., García-Gil, C. B., Ariza, R. R., Roldán-Arjona, T., Scortecci, K. C., (2019). Characterization of an AP endonuclease from sugarcane – ScARP1. Biochemical and Biophysical Research Communications 514, 926–932. https://doi.org/10.1016/j.bbrc.2019.04.156
Google Scholar

Chandra, J., Parkhey, S., Keshavkant, S., (2018). Ageing-regulated changes in genetic integrity of two recalcitrant seeded species having contrasting longevity. Trees 32, 109–123. https://doi.org/10.1007/s00468-017-1615-6
Google Scholar

Chen, H., Chu, P., Zhou, Y., Li, Y., Liu, J., Ding, Y., Tsang, E. W. T., Jiang, L., Wu, K., Huang, S., (2012). Overexpression of AtOGG1, a DNA glycosylase/AP lyase, enhances seed longevity and abiotic stress tolerance in Arabidopsis. Journal of Experimental Botany 63, 4107–4121. https://doi.org/10.1093/jxb/ers093
Google Scholar

Chen, H., Osuna, D., Colville, L., Lorenzo, O., Graeber, K., Küster, H., Leubner-Metzger, G., Kranner, I., (2013). Transcriptome-Wide Mapping of Pea Seed Ageing Reveals a Pivotal Role for Genes Related to Oxidative Stress and Programmed Cell Death. PLoS ONE 8, e78471. https://doi.org/10.1371/journal.pone.0078471
Google Scholar

Córdoba-Cañero, D., Roldán-Arjona, T., Ariza, R. R., (2014). Arabidopsis ZDP DNA 3′-phosphatase and ARP endonuclease function in 8-oxoG repair initiated by FPG and OGG1 DNA glycosylases. Plant J 79, 824–834. https://doi.org/10.1111/tpj.12588
Google Scholar

Dalhus, B., Laerdahl, J. K., Backe, P. H., Bjørås, M., (2009). DNA base repair – recognition and initiation of catalysis. FEMS Microbiol Rev 33, 1044–1078. https://doi.org/10.1111/j.1574-6976.2009.00188.x
Google Scholar

Dany, A. L., Tissier, A., (2001). A functional OGG1 homologue from Arabidopsis thaliana. Molecular Genetics and Genomics 265, 293–301. https://doi.org/10.1007/s004380000414
Google Scholar

Drohat, A. C., Coey, C. T., (2016). Role of Base Excision “Repair” Enzymes in Erasing Epigenetic Marks from DNA. Chem. Rev. 116, 12711–12729. https://doi.org/10.1021/acs.chemrev.6b00191
Google Scholar

El-Maarouf-Bouteau, H., Mazuy, C., Corbineau, F., Bailly, C., (2011). DNA alteration and programmed cell death during ageing of sunflower seed. Journal of Experimental Botany 62, 5003–5011. https://doi.org/10.1093/jxb/err198
Google Scholar

Goel, A., Sheoran, I., (2003). Lipid Peroxidation and Peroxide-Scavenging Enzymes in Cotton Seeds Under Natural Ageing. Biologia Plantarum 46, 429–434. https://doi.org/doi.org/10.1023/A:1024398724076
Google Scholar

Huffman, J. L., Sundheim, O., Tainer, J. A., (2005). DNA base damage recognition and removal: New twists and grooves. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 577, 55–76. https://doi.org/10.1016/j.mrfmmm.2005.03.012
Google Scholar

Jeevan Kumar, S. P., Rajendra Prasad, S., Banerjee, R., Thammineni, C., (2015). Seed birth to death: dual functions of reactive oxygen species in seed physiology. Ann Bot 116, 663–668. https://doi.org/10.1093/aob/mcv098
Google Scholar

Joldybayeva, B., Prorok, P., Grin, I. R., Zharkov, D. O., Ishenko, A. A., Tudek, B., Bissenbaev, A. K., Saparbaev, M., (2014). Cloning and Characterization of a Wheat Homologue of Apurinic/Apyrimidinic Endonuclease Ape1L. PLoS ONE 9, e92963. https://doi.org/10.1371/journal.pone.0092963
Google Scholar

Kathe, S. D., Barrantes-Reynolds, R., Jaruga, P., Newton, M. R., Burrows, C. J., Bandaru, V., Dizdaroglu, M., Bond, J. P., Wallace, S. S., (2009). Plant and fungal Fpg homologs are formamidopyrimidine DNA glycosylases but not 8-oxoguanine DNA glycosylases. DNA Repair 8, 643–653. https://doi.org/10.1016/j.dnarep.2008.12.013
Google Scholar

Kibinza, S., Vinel, D., Côme, D., Bailly, C., Corbineau, F., (2006). Sunflower seed deterioration as related to moisture content during ageing, energy metabolism and active oxygen species scavenging. Physiol Plant 128, 496–506. https://doi.org/10.1111/j.1399-3054.2006.00771.x
Google Scholar

Kong, L., Huo, H., Mao, P., (2015). Antioxidant response and related gene expression in aged oat seed. Front. Plant Sci. 6. https://doi.org/10.3389/fpls.2015.00158
Google Scholar

Macovei, A., Balestrazzi, A., Confalonieri, M., Faé, M., Carbonera, D., (2011). New insights on the barrel medic MtOGG1 and MtFPG functions in relation to oxidative stress response in planta and during seed imbibition. Plant Physiology and Biochemistry 49, 1040–1050. https://doi.org/10.1016/j.plaphy.2011.05.007
Google Scholar

Maira, N., Torres, T. M., de Oliveira, A. L., de Medeiros, S. R. B., Agnez-Lima, L. F., Lima, J. P. M. S., Scortecci, K. C., (2014). Identification, characterisation and molecular modelling of two AP endonucleases from base excision repair pathway in sugarcane provide insights on the early evolution of green plants. Plant Biol J 16, 622–631. https://doi.org/10.1111/plb.12083
Google Scholar

Michalak, M., Plitta-Michalak, B. P., Naskręt-Barciszewska, M., Barciszewski, J., Bujarska-Borkowska, B., Chmielarz, P., (2015). Global 5-methylcytosine alterations in DNA during ageing of Quercus robur seeds. Ann Bot 116, 369–376. https://doi.org/10.1093/aob/mcv104
Google Scholar

Murphy, T. M., Belmonte, M., Shu, S., Britt, A. B., Hatteroth, J., (2009). Requirement for Abasic Endonuclease Gene Homologues in Arabidopsis Seed Development. PLoS ONE 4, e4297. https://doi.org/10.1371/journal.pone.0004297
Google Scholar

Murphy, T.M., George, A., (2005). A comparison of two DNA base excision repair glycosylases from Arabidopsis thaliana. Biochemical and Biophysical Research Communications 329, 869–872. https://doi.org/10.1016/j.bbrc.2005.02.054
Google Scholar

Ratajczak, E., Małecka, A., Bagniewska-Zadworna, A., Kalemba, E. M., (2015). The production, localization and spreading of reactive oxygen species contributes to the low vitality of long-term stored common beech (Fagus sylvatica L.) seeds. Journal of Plant Physiology 174, 147–156. https://doi.org/10.1016/j.jplph.2014.08.021
Google Scholar

Roldán-Arjona, T., Ariza, R. R., (2009). Repair and tolerance of oxidative DNA damage in plants. Mutation Research/Reviews in Mutation Research 681, 169–179. https://doi.org/10.1016/j.mrrev.2008.07.003
Google Scholar

Roldán-Arjona, T., Ariza, R. R., Córdoba-Cañero, D., (2019). DNA Base Excision Repair in Plants: An Unfolding Story With Familiar and Novel Characters. Front. Plant Sci. 10, 1055. https://doi.org/10.3389/fpls.2019.01055
Google Scholar

Romero-Rodríguez, M. C., Archidona-Yuste, A., Abril, N., Gil-Serrano, A. M., Meijón, M., Jorrín-Novo, J. V., (2018). Germination and Early Seedling Development in Quercus ilex Recalcitrant and Non-dormant Seeds: Targeted Transcriptional, Hormonal, and Sugar Analysis. Front. Plant Sci. 9, 1508. https://doi.org/10.3389/fpls.2018.01508
Google Scholar

Scortecci, K. C., Lima, A. F. O., Carvalho, F. M., Silva, U. B., Agnez-Lima, L. F., de Medeiros, S. R. B., (2007). A characterization of a MutM/Fpg ortholog in sugarcane—A monocot plant. Biochemical and Biophysical Research Communications 361, 1054–1060. https://doi.org/10.1016/j.bbrc.2007.07.134
Google Scholar

Tomkinson, A. E., Vijayakumar, S., Pascal, J. M., Ellenberger, T., (2006). DNA Ligases: Structure, Reaction Mechanism, and Function. Chem. Rev. 106, 687–699. https://doi.org/10.1021/cr040498d
Google Scholar

Waterworth, W. M., Drury, G. E., Bray, C. M., West, C. E., (2011). Repairing breaks in the plant genome: the importance of keeping it together: Tansley review. New Phytologist 192, 805–822. https://doi.org/10.1111/j.1469-8137.2011.03926.x
Google Scholar

Zharkov, D. O., (2008). Base excision DNA repair. Cell. Mol. Life Sci. 65, 1544–1565. https://doi.org/10.1007/s00018-008-7543-2
Google Scholar


Published
2020-10-22

Cited by

Włodarczyk, S. (2020) “System BER in the repair of oxidative damage in plants”, Bulletin of Plant Breeding and Acclimatization Institute, (290), pp. 15–19. doi: 10.37317/biul-2020-0013.

Authors

Sylwia Włodarczyk 
s.wlodarczyk@ihar.edu.pl
Instytut Hodowli i Aklimatyzacji Roślin – Państwowy Instytut Badawczy w Radzikowie Poland
https://orcid.org/0000-0002-9987-4976

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