Evaluation of changes in the expression profile of candidate genes in apple rootstockss with a different degree of frost tolerance .

Artlip, T. S., Callahan, A.M., Bassett, C.L., Wisniewski, M.E. (1997). Seasonal expression of a dehydrin in sibling deciduous and evergree genotypes of peach (Prunus persica [L.] Batsch). Plant Molecular Biology, 33: 61‒70.
Google Scholar

Aygun, A. (2005). The late spring frost hardiness of some apple varieties at various stage of flower buds. Tarim Bilimeri Degrisi, 11 (3): 283‒285.
Google Scholar

Bai Y, Dougherty, L., Xu, K. (2014). Towards an improved apple reference transcriptome using RNA-seq. Mol. Genet Genomics, 289: 427‒438.
Google Scholar

Callesen, O. (1996). Testing 20 apple rootstocks. VI Inter.Symposium on Integrated Canopy, Rootstock, Environmental Physiol.in Orchard Systems. Acta Hort., 451: 137‒146.
Google Scholar

Chinnusamy, V., Zhu, J., Zhu, J. K. (2006). Gene regulation during cold acclimation in plants. Physiol. Plant., 126: 52‒61. DOI: 10.1111/j.1399‒3054.2006.00596.
Google Scholar

Du, X., Xiao, Q., Zhao, R., Wu, F., Xu, Q., Chong, K., Meng, Z. (2008). TrMADS3, a New Mad-box gene, from a perennial species Taihangiarupestris is upregulated by cold and experiences seasonal fluctuation in expression level. Dev. Genes Evol., 218: 281‒292.
Google Scholar

Edwards, D., Batley, J. (2010). Plant genome sequencing: applications for crop improvement. Plant Biotechnology Journal, 8 (10): 2‒9.
Google Scholar

Feng M-X., Zhao, Q., Zhao L-L., Qiao, Y., Xie X-B., Li H-F., Yao Y-X., You C-X., Hao Y-J. (2012). The cold-induced basis helix-loop-helix transcrition factor gene MdCIbHLH1 encodes ans ICE-like protein in apple. Plant Biology, 12: 22.
Google Scholar

Gilmour, S. J., Zarka, D.G., Stockinger, E. J., Salazar, M. P., Houghton J. M., Thomashow, M. F. (1998). Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold induced COR gene expression. The Plant Journal, 16: 433‒442. DOI: 10.1046/j.1365‒313x.1998.00310.
Google Scholar

Girardi, C. L., Rombaldi, C. V., Cero, J. D., Nobile, P. M., Laurens, F., Bouzayen, M., Quecini, V. (2013). Genome-wide analysis of the AP2/ERF superfamily in apple and transcriptional evidence of ERF involvement in scab pathogenesis. Scientia Horticulturae, 151: 112‒121.
Google Scholar

Everaert C, Luypaert M, Maag, J. L. V., Cheng, Quek Xiu, Marcel, E. (2017). Benchmarking of RNA-sequencing analysis workflows using wholetranscriptomeRT-qPCR expression. Nature: 7. 1559. DOI: 10.1038/s41598‒017‒01617‒3
Google Scholar

Imelfort, M., Edwards, D. (2009). De novo sequencing of plant genomes using second-generation technologies. Briefings in Bioinformatics, 10 (6): 609‒618.
Google Scholar

Kalberer, S., Wisniewski, M., Arora, R. (2006). Deaclimation and reaclimation of cold-hardy plants: Current understanding and emerging concepts. Plant Scince, 171: 3‒16.
Google Scholar

Kumar, S., Blaxter, M. L. (2010). Comparing de novo assemblers for 454 transcriptome data. BMC Genomics, 11: 571.
Google Scholar

Luby, J. J. (1991). Breeding cold-hardy fruit crops in Minnesota. HortSci., 26: 507‒512.
Google Scholar

Medina, J., Bargues, M., Terol, J., Perez-Alonso, M., Salinas, J. (1999). The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol., 119: 463‒469.
Google Scholar

Medina, J., Catalá, R., Salinas, J. (2011). The CBFs: Three Arabidopsis transcription factors to cold acclimate. Plant Science, 180: 3‒11.
Google Scholar

Orvar Bjorn, L., Sangwan, V., Omann, F., Dhirdsa, R. S. (2000). Early steps in cold sensing by plant cells: the role of actin, cytosceleton and membrane fluidity. The Plant Journal, 23 (6): 785‒794.
Google Scholar

Quamme, H.A. (1990). Cold hardiness of apple rootstocks. Com.Fruit Tree, 23: 11‒16.
Google Scholar

Takata, N., Kasuga, J., Takezawa, D., Arakawa, K., Fujikawa, S. (2007). Gene expression associated with increased supercooling capability in xylem parenhyma cells of larch (Larix kaempferi). Journal of Experimental Botany, 58 (13). 3731‒3742.
Google Scholar

Thomashow, M. F. (1998). Role of Cold-Responsive genes in plant freezing tolerance. Plant Physiol., 118: 1‒7. DOI.​org/​10.​1104/​pp.​118.​1.​1.
Google Scholar

Velasco, R., Zharkikh, A., Affourtit, J., Dhingra, A., Cestaro, A., Kalyanaraman, A., Fontana, P., Bhatnagar, S. K., Troggio, M., Pruss, D., Salvi, S., Pindo, M., Baldi, P., Castelletti, S., Cavaiuolo, M., Coppola, G., Costa, F., Cova, V., Dal Ri, A., Goremykin, V., Komjanc, M., Longhi, S., Magnago, P., Malacarne, G., Malnoy, M., Micheletti, D., Moretto, M., Perazzolli, M., Si-Ammour, A., Vezzulli, S., Zini, E., Eldredge, G., Fitzgerald, L. M., Gutin, N., Lanchbury, J., Macalma, T., Mitchell, J. T., Reid, J., Wardell, B., Kodira, C., Chen, Z., Desany, B., Niazi, F., Palmer, M., Koepke, T., Jiwan, D., Schaeffer, S., Krishnan, V., Wu, C., Chu, V.T., King, S.T., Vick, J., Tao, Q., Mraz, A., Stormo, A., Stormo, K., Bogden, R., Ederle, D., Stella, A., Vecchietti, A., Kater, M.M., Masiero, S., Lasserre, P., Lespinasse, Y., Allan, A.C., Bus, V., Chagné, D., Crowhurst, R.N., Gleave, A.P., Lavezzo, E., Fawcett, J.A., Proost, S., Rouzé, P., Sterck, L., Toppo, S., Lazzari, B., Hellens, R.P., Durel, C.E., Gutin, A., Bumgarner, R.E., Gardiner, S.E., Skolnick, M., Egholm, M., Van de Peer, Y., Salamini, F., Viola, R. (2010). The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics, 42 (10): 833‒841.
Google Scholar

Wisniewski, M., Basset, C., Gusta, V. L. (2003). An overview of cold hardiness in woody plants: Seeing the forest through the trees. HortScience, 38 (5): 952‒959.
Google Scholar

Wisniewski, M., Bassett C, Norelli, J., Artlip, T. (2007). Using biotechnology to improve resistance to environmental stress in fruit crops: The importance of understanding physiology. Acta Hort., 738: 145‒156.
Google Scholar

Wiśniewski, M., Bassett, C., Norelli, J., Macarisisn, D., Artlip, T., Gasic, K., Korban, S. (2008). Expressed sequence tag analysis of the response of apple (Malus x domestica ‘Royal Gala’) to low temperature and water deficit. Phisiologia Plantarum, 133: 298‒317.
Google Scholar

Wisniewski, M., Norelli, J., Bassett, C., Artlip, T., Macarisin, D. (2011). Ectopic expression of novel peach (Prunus persica) CBF transcription factor in apple (Malus x domestica) results in short–day induced dormancy and increased cold hardiness. Planta, 233 (5): 971‒983.
Google Scholar

Xu. (2010). The Apple genome: A delicious promise. New York Fruit Quarterly, 18 (4): 11‒14
Google Scholar

Zeng, Ying, Yang, Tao (2002): RNA isolation from highly viscous samples rich in polyphenols and polysaccharides. Plant Molecular Biology Reporter, 20, 417‒417
Google Scholar

Zhao, T., Liang, D., Wang, P., Liu, J., Ma F. (2012). Genome –wide analysis and expression profiling of the DREB transctiption factor gene family in Malus under abiotic stress. Mol. Genet. Genomics, 287: 423‒436.
Google Scholar