Comparison of two methods of estimation of additive gene action effect on the basis of doubled haploid lines in barley
Jan Bocianowski
office@igr.poznan.plInstytut Genetyki Roślin Polskiej Akademii Nauk w Poznaniu (Poland)
Paweł Krajewski
Instytut Genetyki Roślin Polskiej Akademii Nauk w Poznaniu (Poland)
Abstract
The paper presents numerical comparison of two methods of estimation of the additive gene action effect. In the first method we assume that we observe only the plant phenotype, while in the second method we have additional information from the molecular markers observations. In this paper we analysed phenotypic data from 90 experiments on 150 barley doubled haploid lines and data concerning 223 molecular markers (data from the North American Barley Genome Mapping Project). In most of the considered experiments we observed that the additive effect calculated on the basis of the marker observations underestimates the total additive effect obtained from phenotypic observations only. We observed a large range of results of the relative comparison of the presented estimation methods.
Keywords:
barley, doubled haploid lines, effect of additive gene action, estimation, molecular markersReferences
Bocianowski J., Krajewski P. 2000. Estymacja efektów genetycznych na podstawie fenotypu i genotypu markerowego. Colloquium Biometryczne 30: 270 — 280.
Google Scholar
Bocianowski J., Krajewski P. 2001 a. Badania symulacyjne na temat porównania metody fenotypowej i genotypowej estymacji efektu addytywnego działania genów. XIV Zjazd Polskiego Towarzystwa Genetycznego „Genetyka w służbie człowieka”, Streszczenia: 200.
Google Scholar
Bocianowski J., Krajewski P. 2001 b. Numerical comparison of classical and marker-based methods of QTL effects estimation. In: Quantitative genetics and breeding methods: the way ahead. Proceedings of the Eleventh Meeting of the EUCARPIA Section Biometrics in Plant Breeding. A. Gallais, C. Dillmann and I. Goldringer (eds.). Institut National de la Recherche Agronomique, Paris, France, Les Colloques 96: 35 — 40.
Google Scholar
Bocianowski J., Krajewski P., Kaczmarek Z. 1999. Porównanie metod wyboru ekstremalnych linii podwojonych haploidów w estymacji parametrów genetycznych. Colloquium Biometryczne 29: 193 — 202.
Google Scholar
Charmet G., Robert N., Perretant M. R., Gay G., Sourdille P., Groos C., Bernard S., Bernard M. 1999. Marker-assisted recurrent selection for cumulating additive and interactive QTL’s in recombinant inbred lines. Theor. Appl. Genet. 99: 1143 — 1148.
DOI: https://doi.org/10.1007/s001220051318
Google Scholar
Frova C., Sari-Gorla M. 1994. Quantitative trait loci (QTL) for pollen thermotolerance detected in maize. Mol. Gen. Genet. 245: 424 — 430.
DOI: https://doi.org/10.1007/BF00302254
Google Scholar
Hayes P. M., Iyarnabo O. 1994. Summary of QTL effects in the Steptoe Morex population. Barley Genetics Newsletter 23: 98 — 143.
Google Scholar
Kaczmarek Z., Surma M., Adamski T. 1984. Parametry genetyczne — ich interpretacja i sposoby wyznaczania. Listy Biometryczne — Biometrical Letters 21: 3 — 20.
Google Scholar
Kleinhofs A., Kilian A., Saghai Maroof M. A., Biyashev R. M., Hayes P., Chen F. Q., Lapitan N., Fenwick A., Blake T. K., Kanazin V., Ananiev E., Dahleen L., Kudrna D., Bollinger J., Knapp S. J., Liu B., Sorrells M., Heun M., Franckowiak J. D., Hoffman D., Skadsen R., Steffenson B. J. 1993. A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome. Theor. Appl. Genet. 86: 705 — 712.
DOI: https://doi.org/10.1007/BF00222660
Google Scholar
Li Z.-K., Luo L. J., Mei H. W., Wang D. L., Shu Q. Y., Tabien R., Zhong D. B., Ying C. S., Stansel J. W., Khush G. S., Paterson A. H. 2001. Overdominant epistatic loci are the primary genetic basis of inbreeding depression and heterosis in rice. I. Biomass and grain yield. Genetics 158: 1737 — 1753.
DOI: https://doi.org/10.1093/genetics/158.4.1737
Google Scholar
Romagosa I., Ullrich S. E., Han F., Hayes P. M. 1996. Use of the additive main effects and multiplicative interaction model in QTL mapping for adaptation in barley. Theor. Appl. Genet. 93: 30 — 37.
DOI: https://doi.org/10.1007/BF00225723
Google Scholar
Sari-Gorla M., Krajewski P., Binelli G., Frova C., Taramino G., Villa M. 1997. Genetic dissection of herbicide tolerance in maize by molecular markers. Molecular Breeding 3: 481 — 493.
DOI: https://doi.org/10.1023/A:1009631301428
Google Scholar
Searle S. P. 1982. Matrix algebra useful for statistics. John Wiley and Sons, New York.
Google Scholar
Snape J. W. 1997. Application of doubled haploid lines in plant breeding and genetical research: current issues and approaches. In: Advances in Biometrical Genetics, Proceedings of the Tenth Meeting of the EUCARPIA Section Biometrics in Plant Breeding, P. Krajewski and Z. Kaczmarek (eds.). Institute of Plant Genetics, Poznań, 35 — 46.
Google Scholar
Surma M. 1996. Biometryczno-genetyczna analiza cech ilościowych mieszańców i linii podwojonych haploidów jęczmienia jarego. IGR PAN, Poznań.
Google Scholar
Authors
Jan Bocianowskioffice@igr.poznan.pl
Instytut Genetyki Roślin Polskiej Akademii Nauk w Poznaniu Poland
Authors
Paweł KrajewskiInstytut Genetyki Roślin Polskiej Akademii Nauk w Poznaniu Poland
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