CHARACTERIZATION OF DART SEQUENCES REFLECTING GENOMICREGIONS INVOLVED IN ALUMINUM TOLERANCE IN TRITICALE (X TRITICOSECALE WITTMACK)


Abstract

Aluminum toxicity is the major growth-limiting factor for crop cultivation on acid soils. Tolerance mecha-nisms for Al stress in triticale have not been systematically investigated so far. It is presumed, that in the case of this species they may be a function of the interaction between wheat and rye genes. In this study the se-quences of forty-six Diversity Arrays Technology markers associated with aluminum tolerance in triticale and under selection pressure were blasted against BLAST database for the identification of possible functions of the respective genome regions in Al-stress response. The analysis has showed sequences similarity to the domains involved in signaling, disease response and DNA repair mechanisms.


Keywords

aluminum tolerance; triticale

Budzianowski G, Woś H. (2004) The effect of single D-genome chromosomes on aluminium tolerance of triticale. Euphytica 137:165-172.

Bolibok-Brągoszewska H, Heller Uszyńska K, Wenzl P, Uszyński G, Kilian A, Rakoczy-Trojanowska M. (2009) DArT markers for the rye genome - genetic diversity and mapping. BMC Genomics 10:578.

Delph LF, Kelly JK (2014) On the importance of balancing selection in plants. New Phytol, 201:10.1111/nph.12441.

Fan G, Li X, Deng M, Zhao Z, Yang L (2016) Comparative analysis and identification of miRNAs and their target genes responsive to salt stress in diploid and tetraploid Paulownia fortunei seedlings. PLoS One 11(2):e0149617.

Foy CD (1992). Soil chemical factors limiting plant root growth. In: Hatfield JL & Stewart BA (Eds) Advanc-es in soil science: limitation to plant root growth. Springer, New York pp 97-149.

Gallego FJ, Benito C (1997) Genetic control of aluminium tolerance in rye (Secale cereale L.). Theor Appl Genet 95:393-399.

Gawroński P, Pawełkowicz M, Tofil K, Uszyński G, Sharifova S, Ahluwalia S, Tyrka M, Wędzony M, Kilian A, Bolibok-Brągoszewska H (2016) DArT markers effectively target gene space in the rye genome. Front Plant Sci 7:1600.

Goff KE, Ramonell KM (2007) The role and regulation of receptor-like kinases in plant defense. Gene Regul Syst Bio 1:167-175.

Grenier S, Barre P, Litrico I (2016) Phenotypic plasticity and selection: nonexclusive mechanisms of adapta-tion. Scientifica Article ID 7021701.

Guo TR, Zhang GP, Zhang YH (2007) Physiological changes in barley plants under combined toxicity of aluminum, copper and cadmium. Colloids Surf B Biointerfaces 57:182-8.

Jaccoud D, Peng K, Feinstein D, Kilian A (2001) Diversity Arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Research 29:25.

Kanneganti V, Gupta AK (2008) Wall associated kinases from plants- an overview. Physiol Mol Biol Plants 14:9-118.

Kochian LV (1995) Cellular mechanisms of aluminum toxicity and resistance in plants. Annu Rev Plant Phys-iol Plant Mol Biol 46:237-260.

Kochian LV, Piñeros MA, Liu J, Magalhaes JV (2015) Plant adaptation to acid soils: The molecular basis for crop aluminum resistance. Annual Review of Plant Biology 66:571-598.

Liu W, Xu L, Wang Y, Shen H, Zhu X, Zhang K, Chen Y, Yu R, Limera C, Liu L (2015) Transcriptome-wide analysis of chromium-stress responsive microRNAs to explore miRNA-mediated regulatory networks in radish (Raphanus sativus L.). Sci Rep 5:14024.

Ma JF, Chen ZC, Shen RF (2014) Molecular mechanisms of Al tolerance in gramineous plants. Plant and Soil 381:1-12.

Ma JF, Taketa S, Yang ZM (2000) Aluminium tolerance genes on the short arm of chromosome 3R are linked to organic acid release in triticale. Plant Physiol 122:687-694.

Magalhaes JV, Liu J, Guimarães CT, et al (2007) A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum. Nat Genet 39:1156-61.

Mandal C, Ghosh N, Maiti S, Das K, Gupta S, Dey N, Adak MK (2013) Antioxidative responses of Salvinia (Salvinia natans Linn.) to aluminium stress and it’s modulation by polyamine. Physiol Mol Biol Plants 19:91-103.

Marone D, Russo MA, Laidò G, De Leonardis AM, Mastrangelo AM (2013) Plant nucleotide binding site-leucine-rich repeat (NBS-LRR) genes: active guardians in host defense responses. Int J Mol Sci 14:7302-26.

Milla MA, Butler E, Huete AR, Wilson CF, Anderson O, Gustafson JP (2002) Expressed sequence tag-based gene expression analysis under aluminum stress in rye. Plant Physiol 130:1706-16.

Nezames CD, Sjogren CA, Barajas JF, Larsen PB (2012) The Arabidopsis cell cycle checkpoint regulators TANMEI/ALT2 and ATR mediate the active process of aluminum-dependent root growth inhibition. Plant Cell 24:608-621.

Niedziela A, Bednarek PT, Cichy H, Budzianowski G, Kilian A, Anioł A (2012) Aluminum tolerance associa-tion mapping in triticale. BMC Genomics 13:67.

Niedziela A, Bednarek PT, Labudda M, Mańkowski DR, Anioł A (2014) Genetic mapping of a 7R Al toler-ance QTL in triticale (x Triticosecale Wittmack). JAG 55:1-14.

Niedziela A, Mańkowski D, Bednarek PT (2015) Diversity Arrays Technology-based PCR markers for mark-er assisted selection of aluminum tolerance in triticale (x Triticosecale Wittmack). Molecular Breeding 35:209.

Petroli CD, Sansaloni CP, Carling J, Steane DA, Vaillancourt RE, Myburg AA, da Silva OB Jr, Pappas GJ Jr, Kilian A, Grattapaglia D (2012) Genomic characterization of DArT markers based on high-density link-age analysis and physical mapping to the eucalyptus genome. PLoS One 7(9):e44684.

Roth C, Liberles DA (2006) A systematic search for positive selection in higher plants (Embryophytes). BMC Plant Biology 6:12.

Ryan PR, Raman H, Gupta S, Horst WJ, Delhaize E (2009) A second mechanism for aluminum resistance in wheat relies on the constitutive efflux of citrate from roots. Plant Physiol 149:340-351.

Sasaki T, Ryan PR, Delhaize E, Hebb DM, Ogihara Y, Kawaura K, Noda K, Kojima T, Toyoda A, Matsumo-to H, Yamamoto Y (2006) Sequence upstream of the wheat (Triticum aestivum L.) ALMT1 gene and its relationship to aluminum resistance. Plant Cell Physiol 47:1343-1354.

Silva-Navas J, Benito C, Téllez-Robledo B, El-Moneim A, Gallego FJ (2011) The ScAACT1 gene at the Qalt5 locus as a candidate for increased aluminium tolerance in rye (Secale cereale L.). Mol Breeding 30:845-856.

Tameling WI, Joosten, MH (2007) The diverse roles of NB-LRR proteins in plants. Physiol Mol Plant Pathol 71:126-134.

Torres Acosta JA, de Almeida EJ, Raes J, Magyar Z, de Groodt R, Inzé D, De Veylder L (2004) Molecular characterization of Arabidopsis PHO80-like proteins, a novel class of CDKA;1-interacting cyclins. Cell Mol Life Sci PMID 15197472.

Tovkach A, Ryan PR, Richardson AE, Lewis DC, Rathjen TM, Ramesh S, Tyerman SD, Delhaize E (2013) Transposon-mediated alteration of TaMATE1B expression in wheat confers constitutive citrate efflux from root apices. Plant Physiol 161:880-892.

Tyrka M, Oleszczuk S, Rabiza-Swider J, Wos H, Wedzony M, Zimny J, Ponitka A, Ślusarkiewicz-Jarzina A, Metzger RJ, Baenziger PS, Lukaszewski AJ (2018) Populations of doubled haploids for genetic mapping in hexaploid winter triticale. Mol Breeding 38:46.

Wenzl P, Carling J, Kudrna D, Jaccoud D, Huttner E, Kleinhofs A, Kilian A (2004) Diversity Arrays Technol-ogy (DArT) for whole-genome profiling of barley. PNAS 101:9915-9920.

Yamada K, Nagano AJ, Nishina M, Hara-Nishimura I, Nishimura M (2013) Identification of two novel endo-plasmic reticulum body-specific integral membrane proteins. Plant Physiol 161:108-120.

Zeng Q-Y, Yang C-Y, Ma Q-B, Li X-P, Dong W-W, Nian H (2012) Identification of wild soybean miRNAs and their target genes responsive to aluminum stress. BMC Plant Biol 12:182.

Zhang Y, Xu Y‐H, Yi H‐Y, Gong J‐M (2012) Vacuolar membrane transporters OsVIT1 and OsVIT2 mod-ulate iron translocation between flag leaves and seeds in rice. Plant J 72:400-410.

Zhou ZS, Zeng HQ, Liu ZP, Yang ZM (2012) Genome-wide identification of Medicago truncatula mi-croRNAs and their targets reveals their differential regulation by heavy metal. Plant Cell Environ 3:86-99.

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Published : 2020-06-30


Niedziela, A., & Bednarek, P. (2020). CHARACTERIZATION OF DART SEQUENCES REFLECTING GENOMICREGIONS INVOLVED IN ALUMINUM TOLERANCE IN TRITICALE (X TRITICOSECALE WITTMACK). Plant Breeding and Seed Science, 79, 39-48. https://doi.org/10.37317/pbss-2019-0005

Agnieszka Niedziela  a.niedziela@ihar.edu.pl
Department of Plant Physiology and Biochemistry, Plant Breeding and Acclimatization Institute — National Research Institute, Radzików, 05-870 Błonie, Poland  Poland
http://orcid.org/0000-0002-2886-8835
Piotr Bednarek 
Department of Plant Physiology and Biochemistry, Plant Breeding and Acclimatization Institute — National Research Institute, Radzików, 05-870 Błonie, Poland  Poland
http://orcid.org/0000-0002-1553-8378