System BER in the repair of oxidative damage in plants
Sylwia Włodarczyk
s.wlodarczyk@ihar.edu.plInstytut Hodowli i Aklimatyzacji Roślin – Państwowy Instytut Badawczy w Radzikowie (Poland)
https://orcid.org/0000-0002-9987-4976
Abstract
Plants have developed a number of mechanisms that are responsible for repairing the oxidative damage caused by reactive oxygen species. The base excision repair system is the main repair system for removing such changes. Herein, 8-oxoguanine DNA glycosylase and formamidopyrimidine DNA glycosylase are the two enzymes of importance for removing 8-oxoG. Researchers have confirmed that FPG and OGG1 levels increase during seed imbibition. Indeed, many researchers note the relationship between the accumulation of oxidative changes in the cell and the activity of OGG1 and FPG and the aging of seeds. This short review aims at presenting the published data on the operation of the base excision repair system in the process of repairing oxidative damage affecting seed aging.
Keywords:
BER system, seed aging, ROS, oxidative damage, FPG, OGG1References
Brooks, S. C., Adhikary, S., Rubinson, E. H., Eichman, B. F., (2013). Recent advances in the structural mechanisms of DNA glycosylases. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1834, 247–271. https://doi.org/10.1016/j.bbapap.2012.10.005
Google Scholar
Cabral Medeiros, N. M., Córdoba-Cañero, D., García-Gil, C. B., Ariza, R. R., Roldán-Arjona, T., Scortecci, K. C., (2019). Characterization of an AP endonuclease from sugarcane – ScARP1. Biochemical and Biophysical Research Communications 514, 926–932. https://doi.org/10.1016/j.bbrc.2019.04.156
Google Scholar
Chandra, J., Parkhey, S., Keshavkant, S., (2018). Ageing-regulated changes in genetic integrity of two recalcitrant seeded species having contrasting longevity. Trees 32, 109–123. https://doi.org/10.1007/s00468-017-1615-6
Google Scholar
Chen, H., Chu, P., Zhou, Y., Li, Y., Liu, J., Ding, Y., Tsang, E. W. T., Jiang, L., Wu, K., Huang, S., (2012). Overexpression of AtOGG1, a DNA glycosylase/AP lyase, enhances seed longevity and abiotic stress tolerance in Arabidopsis. Journal of Experimental Botany 63, 4107–4121. https://doi.org/10.1093/jxb/ers093
Google Scholar
Chen, H., Osuna, D., Colville, L., Lorenzo, O., Graeber, K., Küster, H., Leubner-Metzger, G., Kranner, I., (2013). Transcriptome-Wide Mapping of Pea Seed Ageing Reveals a Pivotal Role for Genes Related to Oxidative Stress and Programmed Cell Death. PLoS ONE 8, e78471. https://doi.org/10.1371/journal.pone.0078471
Google Scholar
Córdoba-Cañero, D., Roldán-Arjona, T., Ariza, R. R., (2014). Arabidopsis ZDP DNA 3′-phosphatase and ARP endonuclease function in 8-oxoG repair initiated by FPG and OGG1 DNA glycosylases. Plant J 79, 824–834. https://doi.org/10.1111/tpj.12588
Google Scholar
Dalhus, B., Laerdahl, J. K., Backe, P. H., Bjørås, M., (2009). DNA base repair – recognition and initiation of catalysis. FEMS Microbiol Rev 33, 1044–1078. https://doi.org/10.1111/j.1574-6976.2009.00188.x
Google Scholar
Dany, A. L., Tissier, A., (2001). A functional OGG1 homologue from Arabidopsis thaliana. Molecular Genetics and Genomics 265, 293–301. https://doi.org/10.1007/s004380000414
Google Scholar
Drohat, A. C., Coey, C. T., (2016). Role of Base Excision “Repair” Enzymes in Erasing Epigenetic Marks from DNA. Chem. Rev. 116, 12711–12729. https://doi.org/10.1021/acs.chemrev.6b00191
Google Scholar
El-Maarouf-Bouteau, H., Mazuy, C., Corbineau, F., Bailly, C., (2011). DNA alteration and programmed cell death during ageing of sunflower seed. Journal of Experimental Botany 62, 5003–5011. https://doi.org/10.1093/jxb/err198
Google Scholar
Goel, A., Sheoran, I., (2003). Lipid Peroxidation and Peroxide-Scavenging Enzymes in Cotton Seeds Under Natural Ageing. Biologia Plantarum 46, 429–434. https://doi.org/doi.org/10.1023/A:1024398724076
Google Scholar
Huffman, J. L., Sundheim, O., Tainer, J. A., (2005). DNA base damage recognition and removal: New twists and grooves. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 577, 55–76. https://doi.org/10.1016/j.mrfmmm.2005.03.012
Google Scholar
Jeevan Kumar, S. P., Rajendra Prasad, S., Banerjee, R., Thammineni, C., (2015). Seed birth to death: dual functions of reactive oxygen species in seed physiology. Ann Bot 116, 663–668. https://doi.org/10.1093/aob/mcv098
Google Scholar
Joldybayeva, B., Prorok, P., Grin, I. R., Zharkov, D. O., Ishenko, A. A., Tudek, B., Bissenbaev, A. K., Saparbaev, M., (2014). Cloning and Characterization of a Wheat Homologue of Apurinic/Apyrimidinic Endonuclease Ape1L. PLoS ONE 9, e92963. https://doi.org/10.1371/journal.pone.0092963
Google Scholar
Kathe, S. D., Barrantes-Reynolds, R., Jaruga, P., Newton, M. R., Burrows, C. J., Bandaru, V., Dizdaroglu, M., Bond, J. P., Wallace, S. S., (2009). Plant and fungal Fpg homologs are formamidopyrimidine DNA glycosylases but not 8-oxoguanine DNA glycosylases. DNA Repair 8, 643–653. https://doi.org/10.1016/j.dnarep.2008.12.013
Google Scholar
Kibinza, S., Vinel, D., Côme, D., Bailly, C., Corbineau, F., (2006). Sunflower seed deterioration as related to moisture content during ageing, energy metabolism and active oxygen species scavenging. Physiol Plant 128, 496–506. https://doi.org/10.1111/j.1399-3054.2006.00771.x
Google Scholar
Kong, L., Huo, H., Mao, P., (2015). Antioxidant response and related gene expression in aged oat seed. Front. Plant Sci. 6. https://doi.org/10.3389/fpls.2015.00158
Google Scholar
Macovei, A., Balestrazzi, A., Confalonieri, M., Faé, M., Carbonera, D., (2011). New insights on the barrel medic MtOGG1 and MtFPG functions in relation to oxidative stress response in planta and during seed imbibition. Plant Physiology and Biochemistry 49, 1040–1050. https://doi.org/10.1016/j.plaphy.2011.05.007
Google Scholar
Maira, N., Torres, T. M., de Oliveira, A. L., de Medeiros, S. R. B., Agnez-Lima, L. F., Lima, J. P. M. S., Scortecci, K. C., (2014). Identification, characterisation and molecular modelling of two AP endonucleases from base excision repair pathway in sugarcane provide insights on the early evolution of green plants. Plant Biol J 16, 622–631. https://doi.org/10.1111/plb.12083
Google Scholar
Michalak, M., Plitta-Michalak, B. P., Naskręt-Barciszewska, M., Barciszewski, J., Bujarska-Borkowska, B., Chmielarz, P., (2015). Global 5-methylcytosine alterations in DNA during ageing of Quercus robur seeds. Ann Bot 116, 369–376. https://doi.org/10.1093/aob/mcv104
Google Scholar
Murphy, T. M., Belmonte, M., Shu, S., Britt, A. B., Hatteroth, J., (2009). Requirement for Abasic Endonuclease Gene Homologues in Arabidopsis Seed Development. PLoS ONE 4, e4297. https://doi.org/10.1371/journal.pone.0004297
Google Scholar
Murphy, T.M., George, A., (2005). A comparison of two DNA base excision repair glycosylases from Arabidopsis thaliana. Biochemical and Biophysical Research Communications 329, 869–872. https://doi.org/10.1016/j.bbrc.2005.02.054
Google Scholar
Ratajczak, E., Małecka, A., Bagniewska-Zadworna, A., Kalemba, E. M., (2015). The production, localization and spreading of reactive oxygen species contributes to the low vitality of long-term stored common beech (Fagus sylvatica L.) seeds. Journal of Plant Physiology 174, 147–156. https://doi.org/10.1016/j.jplph.2014.08.021
Google Scholar
Roldán-Arjona, T., Ariza, R. R., (2009). Repair and tolerance of oxidative DNA damage in plants. Mutation Research/Reviews in Mutation Research 681, 169–179. https://doi.org/10.1016/j.mrrev.2008.07.003
Google Scholar
Roldán-Arjona, T., Ariza, R. R., Córdoba-Cañero, D., (2019). DNA Base Excision Repair in Plants: An Unfolding Story With Familiar and Novel Characters. Front. Plant Sci. 10, 1055. https://doi.org/10.3389/fpls.2019.01055
Google Scholar
Romero-Rodríguez, M. C., Archidona-Yuste, A., Abril, N., Gil-Serrano, A. M., Meijón, M., Jorrín-Novo, J. V., (2018). Germination and Early Seedling Development in Quercus ilex Recalcitrant and Non-dormant Seeds: Targeted Transcriptional, Hormonal, and Sugar Analysis. Front. Plant Sci. 9, 1508. https://doi.org/10.3389/fpls.2018.01508
Google Scholar
Scortecci, K. C., Lima, A. F. O., Carvalho, F. M., Silva, U. B., Agnez-Lima, L. F., de Medeiros, S. R. B., (2007). A characterization of a MutM/Fpg ortholog in sugarcane—A monocot plant. Biochemical and Biophysical Research Communications 361, 1054–1060. https://doi.org/10.1016/j.bbrc.2007.07.134
Google Scholar
Tomkinson, A. E., Vijayakumar, S., Pascal, J. M., Ellenberger, T., (2006). DNA Ligases: Structure, Reaction Mechanism, and Function. Chem. Rev. 106, 687–699. https://doi.org/10.1021/cr040498d
Google Scholar
Waterworth, W. M., Drury, G. E., Bray, C. M., West, C. E., (2011). Repairing breaks in the plant genome: the importance of keeping it together: Tansley review. New Phytologist 192, 805–822. https://doi.org/10.1111/j.1469-8137.2011.03926.x
Google Scholar
Zharkov, D. O., (2008). Base excision DNA repair. Cell. Mol. Life Sci. 65, 1544–1565. https://doi.org/10.1007/s00018-008-7543-2
Google Scholar
Authors
Sylwia Włodarczyks.wlodarczyk@ihar.edu.pl
Instytut Hodowli i Aklimatyzacji Roślin – Państwowy Instytut Badawczy w Radzikowie Poland
https://orcid.org/0000-0002-9987-4976
Statistics
Abstract views: 209PDF downloads: 211
License
![Creative Commons License](http://i.creativecommons.org/l/by-sa/4.0/88x31.png)
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Upon submitting the article, the Authors grant the Publisher a non-exclusive and free license to use the article for an indefinite period of time throughout the world in the following fields of use:
- Production and reproduction of copies of the article using a specific technique, including printing and digital technology.
- Placing on the market, lending or renting the original or copies of the article.
- Public performance, exhibition, display, reproduction, broadcasting and re-broadcasting, as well as making the article publicly available in such a way that everyone can access it at a place and time of their choice.
- Including the article in a collective work.
- Uploading an article in electronic form to electronic platforms or otherwise introducing an article in electronic form to the Internet or other network.
- Dissemination of the article in electronic form on the Internet or other network, in collective work as well as independently.
- Making the article available in an electronic version in such a way that everyone can access it at a place and time of their choice, in particular via the Internet.
Authors by sending a request for publication:
- They consent to the publication of the article in the journal,
- They agree to give the publication a DOI (Digital Object Identifier),
- They undertake to comply with the publishing house's code of ethics in accordance with the guidelines of the Committee on Publication Ethics (COPE), (http://ihar.edu.pl/biblioteka_i_wydawnictwa.php),
- They consent to the articles being made available in electronic form under the CC BY-SA 4.0 license, in open access,
- They agree to send article metadata to commercial and non-commercial journal indexing databases.
Most read articles by the same author(s)
- Jerzy H. Czembor, Grzegorz Gryziak, Marcin Zaczyński, Sylwia Włodarczyk, Wiesław Podyma, Collection and preservation of crop genetic resources in Poland 2015–2017 , Bulletin of Plant Breeding and Acclimatization Institute: No. 283 (2018): Special issue
Similar Articles
- Barbara Wiewióra, Effect of natural methods of treatments on seed health in cereals originated from ecological seed plantations , Bulletin of Plant Breeding and Acclimatization Institute: No. 251 (2009): Regular issue
- Barbara Wiewióra, Susceptibility of spring barley to infection of Bipolaris sorokiniana (Sacc.) Shoem. the causal agent of spot blotch , Bulletin of Plant Breeding and Acclimatization Institute: No. 252 (2009): Regular issue
- Krystyna Zarzyńska, Productivity of new potato cultivars under organic and conventional production system , Bulletin of Plant Breeding and Acclimatization Institute: No. 299 (2023): Regular issue
- Elżbieta Czembor, Effects of organic fertilization on agronomic traits of perennial grass species recommended for conventional and low input farming , Bulletin of Plant Breeding and Acclimatization Institute: No. 270 (2013): Regular issue
- Anna Pęksa, Elżbieta Rytel, Agnieszka Tajner-Czopek, Agnieszka Kita, Maria Pytlarz-Kozicka, Joanna Miedzianka, The comparison of amino acid composition of the protein in preparations obtained from potato tubers cultivated within ecological and conventional systems , Bulletin of Plant Breeding and Acclimatization Institute: No. 266 (2012): Regular issue
- Barbara Krzysztofik, Krzysztof Sułkowski, Effect of selected factors on the value of mechanical damage index of potato tubers destined for food processing , Bulletin of Plant Breeding and Acclimatization Institute: No. 266 (2012): Regular issue
- Elżbieta Małuszyńska, Anna Szydłowska, Danuta Martyniak, Szymon Dziamba, Joanna Dziamba, The influence of formulations containing effective microorganisms on germination capacity of organic seeds , Bulletin of Plant Breeding and Acclimatization Institute: No. 263 (2012): Regular issue
- Dariusz R. Mańkowski, Tadeusz Oleksiak, Factors determining application of certified seed material in farms , Bulletin of Plant Breeding and Acclimatization Institute: No. 244 (2007): Regular issue
- Bogusław Gołębiowski, The views of Polish breeders on perspectives for development of plant breeding and seed production in Poland , Bulletin of Plant Breeding and Acclimatization Institute: No. 252 (2009): Regular issue
- Elżbieta Małuszyńska, Dariusz R. Mańkowski, Seed sowing value of certified seed of winter wheat stored in storehouse , Bulletin of Plant Breeding and Acclimatization Institute: No. 297/298 (2022): Regular issue
<< < 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 > >>
You may also start an advanced similarity search for this article.