Application of n-dimensional dot-matrix to analysis of plant genetic diversity
Andrzej Kasperski
A.Kasperski@wnb.uz.zgora.plWydział Nauk Biologicznych, Katedra Biotechnologii, Uniwersytet Zielonogórski, ul. Szafrana 1 65-516 Zielona Góra (Poland)
Renata Kasperska
Instytut Inżynierii Bezpieczeństwa i Nauk o Pracy, Uniwersytet Zielonogórski, ul. Szafrana 4 65-516 Zielona Góra (Poland)
Abstract
The aim of this study is to present the possibilities of using a new method for genetic variability analysis of organisms, including organisms of industrial use. The proposed method works at two levels — at the amino-acid comparison level and at the amino-acid codon comparison level, i.e. at the genetic code level. The paper presents analysis of proteinase inhibitors from squash seeds and analysis of cytochrome c of selected crops. Moreover, the results obtained using the new method of genetic variability two-level analysis, have been used to interpret the phylogenetic trees constructed for the analyzed sequences.
Keywords:
n-dimensional dot-matrix, statistical evaluation of alignments, transversion, transition, genetic variationReferences
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Authors
Andrzej KasperskiA.Kasperski@wnb.uz.zgora.pl
Wydział Nauk Biologicznych, Katedra Biotechnologii, Uniwersytet Zielonogórski, ul. Szafrana 1 65-516 Zielona Góra Poland
Authors
Renata KasperskaInstytut Inżynierii Bezpieczeństwa i Nauk o Pracy, Uniwersytet Zielonogórski, ul. Szafrana 4 65-516 Zielona Góra Poland
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Copyright (c) 2015 Andrzej Kasperski, Renata Kasperska
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