Analysis of genome regions linked to the resistance of blackcurrant (Ribes nigrum) to blackcurrant gall mite (Cecidophyopsis ribis)
Anita Kuras
anita.kuras@inhort.plZakład Hodowli Roślin Ogrodniczych, Instytut Ogrodnictwa, ul. Konstytucji 3 Maja 1/3, 96‒100 Skierniewice (Poland)
http://orcid.org/0000-0003-4724-788X
Bogumiła Badek
Zakład Hodowli Roślin Ogrodniczych, Instytut Ogrodnictwa, ul. Konstytucji 3 Maja 1/3, 96‒100 Skierniewice (Poland)
http://orcid.org/0000-0002-0542-0798
Abstract
Blackcurrant gall mite (Cecidophyopsis ribis) is one of the most dangerous pests of blackcurrant. It causes deformation of blackcurrant buds and reduces fruit yield. The selection of the most favorable molecular markers coupled to resistance to C.ribis, can accelerate the breeding process and improve efficacy when choosing genotypes that are resistant to this disease. The aim of this study was to analyze genome regions conjugated with resistance of blackcurrant (Ribes nigrum) to blackcurrant gall mite by assessing the degree of polymorphism in coupling groups, including the Ce and P regions, and by searching for new genome fragments regulating C. ribis resistance. As a result of the analysis of electrophoregrams with CAPS reaction products, 119 polymorphic DNA fragments were identified, out of which 100 were selected for sequence analysis. As the end product of sequencing, 9 specific readings were obtained on DNA matrices of the varieties ‘Ceres’, ‘Ojebyn’, ‘Vir’, ‘Ores’, ‘Foxendown’, ‘Ben Finlay’ and ‘Bona’.
Supporting Agencies
Keywords:
CAPS, Cecidophyopsis ribis, molecular marker, blackcurrantReferences
Anderson, M. M. (1971). Resistance to gall mite (Phytoptus ribis Nal.) in the Eucoreosma section of Ribes. Euphytica (20), 422–426.
Google Scholar
Bang, H., Kim, S., Leskovar, D., King, S. (2007). Development of a codominant CAPS marker for allelic selection between canary yellow and red watermelon based on SNP in lycopene β-cyclase (LCYB) gene. Molecular Breedin (20), 63–72
Google Scholar
Brennan, R., Jorgensen, L., Gordon, S., Loades, K., Hackett, C., Russell, J. (2008). The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae). Theor. Appl. Genet. (118), 205–211.
Google Scholar
Brennan, R. M., Lanham, P. G., McNicol, R. J. (1993). Ribes reeding and research in the UK. Acta Horticulturae (352), 267–275. https://doi.org/10.17660/ActaHortic.1993.352.38.
Google Scholar
Doyle, J. J., Doyle, J. L. (1990). Isolation of plant DNA from fresh tissue. Focus (12),13–15.
Google Scholar
Gupta, P. K., Varshney, R. K., Sharma, P. C., Ramesh, B. (1999). Molecular markers and their applications in wheat breeding. Plant Breed (118),369–390.
Google Scholar
Knight, R. L., Keep, E., Briggs, J. B., Parker, J. (1974). Transference of resistance to black currant gall mite Cecidophyopsis ribis, from gooseberry to black currant. Ann. Appl. Biol. (76),123–130.
Google Scholar
Łabanowska, B. H., Piotrowski, W., Gruchała, M. (2015). Blackcurrant gall mite – Cecidophyopsis ribis (Westw.), harmfulness and possibility to control with fenpyroximate (Ortus 05 SC). Prog. Plant Prot. 55 (3), 305–311.
Google Scholar
Mazeikiene, I., Bendokas, V., Stanys, V., Siksnianas, T. (2012): Molecular markers linked to resistance to the gall mite in blackcurrant. Plant Breeding. (131),762–766.
Google Scholar
Pluta, S., Żurawicz, E. (2002). Effect of reversion virus on the yield and fruit size in blackcurrant Ribes nigrum L. Proceedings 8th International Symposium Rubus and Ribes. Scotland, Dundee. July 2001. Acta Horticulturae 585 (1): 393–398.
Google Scholar
Sanger, F., Coulson, A. R. (1975). A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J Mol Biol. 94(3): 441–448.
Google Scholar
Thiel, T, Kota, R, Grosse, I, Stein, N, Graner, A. (2004). SNP2CAPS: a SNP and INDEL analysis tool for CAPS marker development. Nucleic Acids Res; (32),e5.
Google Scholar
Authors
Anita Kurasanita.kuras@inhort.pl
Zakład Hodowli Roślin Ogrodniczych, Instytut Ogrodnictwa, ul. Konstytucji 3 Maja 1/3, 96‒100 Skierniewice Poland
http://orcid.org/0000-0003-4724-788X
Authors
Bogumiła BadekZakład Hodowli Roślin Ogrodniczych, Instytut Ogrodnictwa, ul. Konstytucji 3 Maja 1/3, 96‒100 Skierniewice Poland
http://orcid.org/0000-0002-0542-0798
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