Comparison of five measures of genetic diversity of Polish wheats estimated on the basis of microsatellite markers

Jan Bocianowski

jan.bocianowski@up.poznan.pl
Katedra Metod Matematycznych i Statystycznych, Akademia Rolnicza w Poznaniu (Poland)

Łukasz Stępień


Instytut Genetyki Roślin, Polskiej Akademii Nauk w Poznaniu (Poland)

Abstract

The aim of this study was to represent genetic distance among Polish wheat cultivars. The paper presents five methods of estimation of genetic distance based on coefficients proposed by Jaccard, Kulczynski, Sokal and Michener, Nei, Rogers. Material for the study involved 53 Polish wheat cultivars. The genetic distance of cultivars was estimated on the basis of 164 microsatellite alleles. The largest values of genetic diversity were obtained for the Jaccard’s distance. Significant positive correlation coefficients were obtained for the Jaccard’s, Kulczynski’s, Sokal and Michener’s and Nei’s distances. The results obtained for the Rogers’ distance were different from other compared distances.


Keywords:

genetic distance, microsatellite markers, wheat

Burkhamer R. L., Lanning S. P., Martens R. J., Martin J. M., Talbert L. E. 1998. Predicting progeny variance from parental divergence in hard red spring wheat. Crop Sci. 38: 243 — 248. DOI: https://doi.org/10.2135/cropsci1998.0011183X003800010041x
Google Scholar

Dillmann C., Bar-Hen A., Guérin D., Charcosset A., Murigneux A. 1997. Comparison of RFLP and morphological distance between maize Zea mays L. inbred lines. Consequences for germplasm protection purposes. Theor. Appl. Genet. 95: 92 — 102. DOI: https://doi.org/10.1007/s001220050536
Google Scholar

Heckenberger M., Bohnb M., Klein D., Melchinger A. E. 2005. Identification of essentially derived varieties obtained from biparental crosses of homozygous lines. II. Morphological distances and heterosis in comparison with simple sequence repeat and amplified fragment length polymorphism data in maize. Crop Sci. 45: 1132 — 1140. DOI: https://doi.org/10.2135/cropsci2004.0111
Google Scholar

Huang X. Q., Boerner A., Roeder M. S., Ganal M. W. 2002. Assessing genetic diversity of wheat (Triticum aestivum L.) germplasm using microsatellite markers. Theor. Appl. Genet. 105: 699 — 707. DOI: https://doi.org/10.1007/s00122-002-0959-4
Google Scholar

Jaccard P. 1908. Nouvelles recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 44: 223 — 270.
Google Scholar

Kim H. S., Ward R. W. 2000. Patterns of RFLP-based genetic diversity in germplasm pools of common wheat with different geographical or breeding program origins. Euphytica 115: 197 — 208. DOI: https://doi.org/10.1023/A:1004022601879
Google Scholar

Kuczyńska A., Milczarski P., Surma M., Masojć P., Adamski T. 2001. Genetic diversity among cultivars of spring barley revealed by random amplified polymorphic DNA (RAPD). J. Appl. Genet. 42(1): 43 — 48.
Google Scholar

Kulczynski S. 1927. Die Pflanzenassoziationen der Pieninen. Bull. Intern. Acad. Pol. Sci. Lett. Cl. Sci. Math. Nat., B (Sci. Nat.) 1927 (Suppl. 2): 57 — 203.
Google Scholar

Mądry W., Śmiałowski T., Ukalski K. 2005. Przewidywanie średnich cechy w populacjach potomstwa na podstawie parametrów biometryczno-genetycznych rodziców: modele i ich zastosowanie dla żyta ozimego. Biul. IHAR 235: 251 — 268.
Google Scholar

Myśków B., Masojć P., Banek-Tabor A., Szolkowski A. 2001. Genetic diversity of inbred rye lines evaluated by RAPD analysis. J. Appl. Genet. 42 (1): 1 — 14.
Google Scholar

Nei M. 1972. Genetic distance between populations. Am. Nat. 106: 283 — 292. DOI: https://doi.org/10.1086/282771
Google Scholar

Patzak J. 2001. Comparison of RAPD, STS, ISSR, and AFLP molecular methods used for assessment of genetic diversity in hop (Humulus lupulus L.). Euphytica 121: 9 — 18.
Google Scholar

Pestsova E., Korzun V., Goncharov N. P., Hammer K., Ganal M. W., Roeder M. S. 2000. Microsatellite analysis of Aegilops tauschii germplasm. Theor. Appl. Genet. 101: 100 — 106. DOI: https://doi.org/10.1007/s001220051456
Google Scholar

Plaschke J., Ganal M. W., Roeder M. S. 1995. Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor. Appl. Genet. 91: 1001 — 1007. DOI: https://doi.org/10.1007/BF00223912
Google Scholar

Powell W., Morgante W. M., Andre C., Hanafrey M., Vogel J., Tingey S., Rafalski A. 1996. Comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2: 225 — 228. DOI: https://doi.org/10.1007/BF00564200
Google Scholar

Roeder M. S., Wendehake K., Korzun V., Bredemeijer G., Laborie D., Bertrand L., Isaac P., Rendell S., Jackson J., Cooke R. J., Vosmann B., Ganal M. W. 2002. Construction and analysis of a microsatellite-based database of European wheat cultivars. Theor. Appl. Genet. 106: 67 — 73. DOI: https://doi.org/10.1007/s00122-002-1061-7
Google Scholar

Rogers J. S. 1972. Measures of genetic similarity and genetic distance. Studies in Genetics, University of Texas Publication 7213: 145 — 153.
Google Scholar

Sokal R. R., Michener C. D. 1958. A statistical method for evaluating systematic relationships. Univ. Kansas Sci. Bull. 38: 1409 — 1438.
Google Scholar

Stępień Ł., Golka L., Chełkowski J. 2003. Leaf rust resistance genes of wheat: identification in cultivars and resistance sources. J. Appl. Genet. 44 (2): 139 — 149.
Google Scholar


Published
2006-12-31

Cited by

Bocianowski, J. and Stępień, Łukasz (2006) “Comparison of five measures of genetic diversity of Polish wheats estimated on the basis of microsatellite markers”, Bulletin of Plant Breeding and Acclimatization Institute, (242), pp. 27–32. doi: 10.37317/biul-2006-0003.

Authors

Jan Bocianowski 
jan.bocianowski@up.poznan.pl
Katedra Metod Matematycznych i Statystycznych, Akademia Rolnicza w Poznaniu Poland

Authors

Łukasz Stępień 

Instytut Genetyki Roślin, Polskiej Akademii Nauk w Poznaniu Poland

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